Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18360

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 291
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21


Found at i:54 original size:25 final size:25

Alignment explanation


    Indices: 20--70  Score: 102
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         10 CAAGTCGTCT

                                     
         20 CGGTCCCTCCCCTTTCGAATCATCC
          1 CGGTCCCTCCCCTTTCGAATCATCC

                                     
         45 CGGTCCCTCCCCTTTCGAATCATCC
          1 CGGTCCCTCCCCTTTCGAATCATCC

             
         70 C
          1 C

         71 CTCCGGCACC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   26  1.00

ACGTcount: A:0.12, C:0.49, G:0.12, T:0.27


Consensus pattern (25 bp):   
CGGTCCCTCCCCTTTCGAATCATCC

Done.