Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11686

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 228

Length: 381
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24


Found at i:260 original size:21 final size:18

Alignment explanation


    Indices: 223--257  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        213 GAAGAAAGAT

                              
        223 GGTGGGAAGAAAGATGAA
          1 GGTGGGAAGAAAGATGAA

                       *     
        241 GGTGGGAAGAAGGATGA
          1 GGTGGGAAGAAAGATGA

        258 TGATAATAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11


Consensus pattern (18 bp):   
GGTGGGAAGAAAGATGAA
Done.