Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31397

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19


Found at i:75 original size:6 final size:6

Alignment explanation


    Indices: 67--108  Score: 66
    Period size: 6  Copynumber: 7.0  Consensus size: 6

         57 TGGGGGACAT

                 *             *                            
         67 GGGCAT GGGCAC GGGCAT GGGCAC GGGCAC GGGCAC GGGCAC
          1 GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC GGGCAC

        109 ATGATCCATC


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.17, C:0.29, G:0.50, T:0.05


Consensus pattern (6 bp):   
GGGCAC

Found at i:82 original size:12 final size:12

Alignment explanation


    Indices: 67--107  Score: 73
    Period size: 12  Copynumber: 3.4  Consensus size: 12

         57 TGGGGGACAT

                        
         67 GGGCATGGGCAC
          1 GGGCATGGGCAC

                        
         79 GGGCATGGGCAC
          1 GGGCATGGGCAC

                 *      
         91 GGGCACGGGCAC
          1 GGGCATGGGCAC

                 
        103 GGGCA
          1 GGGCA

        108 CATGATCCAT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  12   28  1.00

ACGTcount: A:0.17, C:0.27, G:0.51, T:0.05


Consensus pattern (12 bp):   
GGGCATGGGCAC

Done.