Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10557

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 316

Length: 528
ACGTcount: A:0.25, C:0.37, G:0.13, T:0.26


Found at i:193 original size:21 final size:21

Alignment explanation


    Indices: 153--193  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        143 CGCCGCCACC

                        *  *     
        153 ACCATCTCCACCGCCGCCTAA
          1 ACCATCTCCACCACCACCTAA

                   *            
        174 ACCATCTTCACCACCACCTA
          1 ACCATCTCCACCACCACCTA

        194 CAGTTCCTAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.27, C:0.51, G:0.05, T:0.17


Consensus pattern (21 bp):   
ACCATCTCCACCACCACCTAA
Done.