Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25972

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1671
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24


Found at i:182 original size:3 final size:3

Alignment explanation


    Indices: 169--212  Score: 52
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        159 GGAATCCAAT

                 *                            *   *                   
        169 AAG AGG AAG AAG AAG AAG AAG CAAG ACG AGG AAG AAG AAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG A

        213 GCCGGAGGAA


Statistics
Matches: 35,  Mismatches: 5, Indels: 2
        0.83            0.12        0.05

Matches are distributed among these distances:
   3   32  0.91
   4    3  0.09

ACGTcount: A:0.59, C:0.05, G:0.36, T:0.00


Consensus pattern (3 bp):   
AAG

Done.