Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18264

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24


Found at i:651 original size:27 final size:27

Alignment explanation


    Indices: 620--678  Score: 82
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        610 GTGGCTGAAG

                        **   **        
        620 AGGTGGGACCTTTGAAGTTGCCTTCAC
          1 AGGTGGGACCTTCAAAGGCGCCTTCAC

                                       
        647 AGGTGGGACCTTCAAAGGCGCCTTCAC
          1 AGGTGGGACCTTCAAAGGCGCCTTCAC

                 
        674 AGGTG
          1 AGGTG

        679 TCTAAACCAG


Statistics
Matches: 28,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.20, C:0.24, G:0.32, T:0.24


Consensus pattern (27 bp):   
AGGTGGGACCTTCAAAGGCGCCTTCAC
Done.