Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34847

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2037
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31


Found at i:1751 original size:72 final size:72

Alignment explanation


    Indices: 1628--1761  Score: 198
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       1618 GTGTTGAATC

                                                     *                       
       1628 TCTCCCAGAACAAGCTCTTTGGTGAACTGACTCCAGAATTAGCAAAACTTACAGATCTGGAATCG
          1 TCTCCCAGAACAAGCTCTTTGGTGAACTGACTCCAGAATTAACAAAACTTACAGATCTGGAATCG

                   
       1693 TTGGATG
         66 TTGGATG

                   *                       *               *      **       
       1700 TCTCCCATAACAAGCTCTTTGGTGAACT-ATGTCCAGAATTAACAAATCTTACATTTCTGGAA
          1 TCTCCCAGAACAAGCTCTTTGGTGAACTGA-CTCCAGAATTAACAAAACTTACAGATCTGGAA

       1762 GTATTCAACG


Statistics
Matches: 55,  Mismatches: 6, Indels: 2
        0.87            0.10        0.03

Matches are distributed among these distances:
  71    1  0.02
  72   54  0.98

ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29


Consensus pattern (72 bp):   
TCTCCCAGAACAAGCTCTTTGGTGAACTGACTCCAGAATTAACAAAACTTACAGATCTGGAATCG
TTGGATG
Done.