Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_32901

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2022
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26


Found at i:993 original size:42 final size:42

Alignment explanation


    Indices: 946--1037  Score: 116
    Period size: 42  Copynumber: 2.2  Consensus size: 42

        936 TGGTGGTGAA

                                                     *  
        946 GCTTCTGTTCAAGCCCAAAGCCAGGTC-CAACAAGGTCCC-CTT
          1 GCTTCTGTTCAAGCCCAAAGCCA-GTCTCAACAAGG-CCCTATT

                     *         **                     
        988 GCTTCTGTTGAAGCCCAAATTCAGTCTCAACAAGGCCCTATT
          1 GCTTCTGTTCAAGCCCAAAGCCAGTCTCAACAAGGCCCTATT

                    
       1030 GCTTCTGT
          1 GCTTCTGT

       1038 CTCATCCCGT


Statistics
Matches: 44,  Mismatches: 4, Indels: 4
        0.85            0.08        0.08

Matches are distributed among these distances:
  41    6  0.14
  42   38  0.86

ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27


Consensus pattern (42 bp):   
GCTTCTGTTCAAGCCCAAAGCCAGTCTCAACAAGGCCCTATT
Done.