Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00508

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1368
ACGTcount: A:0.36, C:0.14, G:0.24, T:0.26


Found at i:881 original size:3 final size:3

Alignment explanation


    Indices: 873--938  Score: 89
    Period size: 3  Copynumber: 22.0  Consensus size: 3

        863 TAGAAGAGTC

                        *           *                  *                
        873 TGA TGA TGA AGA TGA TGA AGA TGA TGA TGA -GTC TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG-A TGA TGA TGA TGA

                                       
        918 TGA TGA TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA

        939 AACAATGGAT


Statistics
Matches: 55,  Mismatches: 6, Indels: 4
        0.85            0.09        0.06

Matches are distributed among these distances:
   2    1  0.02
   3   53  0.96
   4    1  0.02

ACGTcount: A:0.35, C:0.02, G:0.33, T:0.30


Consensus pattern (3 bp):   
TGA

Done.