Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03228

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 208

Length: 348
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.20


Found at i:94 original size:12 final size:13

Alignment explanation


    Indices: 79--107  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

         69 GGAGGCTTCG

                         
         79 CCACCAGCA-CCA
          1 CCACCAGCAGCCA

                         
         91 CCACCAGCAGCCA
          1 CCACCAGCAGCCA

                
        104 CCAC
          1 CCAC

        108 TGCGCCACCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12    9  0.56
  13    7  0.44

ACGTcount: A:0.31, C:0.59, G:0.10, T:0.00


Consensus pattern (13 bp):   
CCACCAGCAGCCA
Done.