Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02231

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 462

Length: 771
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26


Found at i:572 original size:15 final size:15

Alignment explanation


    Indices: 552--582  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        542 CTGCTATGTT

                   *       
        552 TCATGATGAAGATGA
          1 TCATGATAAAGATGA

                           
        567 TCATGATAAAGATGA
          1 TCATGATAAAGATGA

             
        582 T
          1 T

        583 GCTATTAGTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29


Consensus pattern (15 bp):   
TCATGATAAAGATGA
Done.