Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09208

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 374

Length: 624
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.22


Found at i:380 original size:18 final size:18

Alignment explanation


    Indices: 359--396  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        349 GATGACCACA

                *          *  
        359 AAGGTGAAGATGAAGCTG
          1 AAGGCGAAGATGAAGATG

                              
        377 AAGGCGAAGATGAAGATG
          1 AAGGCGAAGATGAAGATG

              
        395 AA
          1 AA

        397 AGAGATGATA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.45, C:0.05, G:0.37, T:0.13


Consensus pattern (18 bp):   
AAGGCGAAGATGAAGATG
Done.