Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06355

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 441

Length: 735
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23


Found at i:449 original size:15 final size:15

Alignment explanation


    Indices: 429--458  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        419 CTAAGGAAAT

                  *        
        429 CCAAGCCGCTGCTTC
          1 CCAAGCAGCTGCTTC

                           
        444 CCAAGCAGCTGCTTC
          1 CCAAGCAGCTGCTTC

        459 AACATATCTC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.17, C:0.43, G:0.20, T:0.20


Consensus pattern (15 bp):   
CCAAGCAGCTGCTTC
Done.