Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38596

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 916

Length: 1527
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:1249 original size:15 final size:15

Alignment explanation


    Indices: 1229--1261  Score: 57
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1219 AATCATTGGG

                           
       1229 TTGAGCCTGAAAAGT
          1 TTGAGCCTGAAAAGT

                        *  
       1244 TTGAGCCTGAAAGGT
          1 TTGAGCCTGAAAAGT

               
       1259 TTG
          1 TTG

       1262 TCAACAGTTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30


Consensus pattern (15 bp):   
TTGAGCCTGAAAAGT
Done.