Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15877

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1755
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25


Found at i:1498 original size:15 final size:15

Alignment explanation


    Indices: 1478--1507  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1468 AAGTCACTCG

                  *        
       1478 ATATGGCTATAAGGC
          1 ATATGGATATAAGGC

                           
       1493 ATATGGATATAAGGC
          1 ATATGGATATAAGGC

       1508 GACGCATTCC


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27


Consensus pattern (15 bp):   
ATATGGATATAAGGC
Done.