Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27726

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2616
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Found at i:2115 original size:6 final size:6

Alignment explanation


    Indices: 2104--2130  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       2094 AGTAGATAAT

                                           
       2104 GCTGAG GCTGAG GCTGAG GCTGAG GCT
          1 GCTGAG GCTGAG GCTGAG GCTGAG GCT

       2131 AATATTAATG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.19, G:0.48, T:0.19


Consensus pattern (6 bp):   
GCTGAG

Done.