Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_16323

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1754
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24


Found at i:959 original size:6 final size:6

Alignment explanation


    Indices: 940--979  Score: 64
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        930 GAAGTAGAAC

                                                           
        940 AAGAGG AATG-GG AAGAGG AAGAGG AAGAGG AAGAGG AAGA
          1 AAGAGG AA-GAGG AAGAGG AAGAGG AAGAGG AAGAGG AAGA

        980 AGTGAAGCCC


Statistics
Matches: 32,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   5    1  0.03
   6   30  0.94
   7    1  0.03

ACGTcount: A:0.50, C:0.00, G:0.47, T:0.03


Consensus pattern (6 bp):   
AAGAGG

Done.