Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18905

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1680
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23


Found at i:705 original size:21 final size:21

Alignment explanation


    Indices: 679--718  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        669 AGCAGCAGCA

                         *       
        679 TCGCCTCCAACGCCGCCTCAG
          1 TCGCCTCCAACGCAGCCTCAG

                     *         
        700 TCGCCTCCACCGCAGCCTC
          1 TCGCCTCCAACGCAGCCTC

        719 CTAAGGCTGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.12, C:0.55, G:0.17, T:0.15


Consensus pattern (21 bp):   
TCGCCTCCAACGCAGCCTCAG
Done.