Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31858

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 516

Length: 861
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29


Found at i:649 original size:6 final size:6

Alignment explanation


    Indices: 640--682  Score: 86
    Period size: 6  Copynumber: 7.2  Consensus size: 6

        630 TTATAGTTAT

                                                              
        640 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC A
          1 AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC AGGAGC A

        683 AGTCTCCAAG


Statistics
Matches: 37,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.35, C:0.16, G:0.49, T:0.00


Consensus pattern (6 bp):   
AGGAGC

Done.