Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21366

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1998
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29


Found at i:1954 original size:33 final size:34

Alignment explanation


    Indices: 1912--1981  Score: 106
    Period size: 33  Copynumber: 2.1  Consensus size: 34

       1902 TTCTGAAGTT

                              *               
       1912 CAATTTTATGAGAAATCAGAAATCAGAATCCA-C
          1 CAATTTTATGAGAAATCACAAATCAGAATCCAGC

                        *          *          
       1945 CAATTTTATGAGGAATCACAAATGAGAATCCAGC
          1 CAATTTTATGAGAAATCACAAATCAGAATCCAGC

               
       1979 CAA
          1 CAA

       1982 GCTTGGTATC


Statistics
Matches: 33,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
  33   29  0.88
  34    4  0.12

ACGTcount: A:0.44, C:0.19, G:0.14, T:0.23


Consensus pattern (34 bp):   
CAATTTTATGAGAAATCACAAATCAGAATCCAGC
Done.