Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30083

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2703
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27


Found at i:348 original size:27 final size:27

Alignment explanation


    Indices: 317--372  Score: 112
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        307 GAGGTTGGGC

                                       
        317 CAAGTCGGGCTAAAGAGGAACTAGAGG
          1 CAAGTCGGGCTAAAGAGGAACTAGAGG

                                       
        344 CAAGTCGGGCTAAAGAGGAACTAGAGG
          1 CAAGTCGGGCTAAAGAGGAACTAGAGG

              
        371 CA
          1 CA

        373 GATGAATTCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.38, C:0.16, G:0.36, T:0.11


Consensus pattern (27 bp):   
CAAGTCGGGCTAAAGAGGAACTAGAGG
Done.