Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33758

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 509

Length: 849
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23


Found at i:29 original size:6 final size:6

Alignment explanation


    Indices: 17--62  Score: 65
    Period size: 6  Copynumber: 7.7  Consensus size: 6

          7 TCCAATGATC

                   *      *                                *     
         17 ACCATG GCCATG GCCATG ACCATG ACCATG ACCATG ACCATC ACCA
          1 ACCATG ACCATG ACCATG ACCATG ACCATG ACCATG ACCATG ACCA

         63 CCACCACCAC


Statistics
Matches: 37,  Mismatches: 3, Indels: 0
        0.93            0.08        0.00

Matches are distributed among these distances:
   6   37  1.00

ACGTcount: A:0.30, C:0.37, G:0.17, T:0.15


Consensus pattern (6 bp):   
ACCATG

Found at i:68 original size:18 final size:18

Alignment explanation


    Indices: 30--68  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         20 ATGGCCATGG

                      *    ** 
         30 CCATGACCATGACCATGA
          1 CCATGACCATCACCACCA

                              
         48 CCATGACCATCACCACCA
          1 CCATGACCATCACCACCA

               
         66 CCA
          1 CCA

         69 CCACCATCAT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.44, G:0.10, T:0.13


Consensus pattern (18 bp):   
CCATGACCATCACCACCA
Done.