Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11048

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2445
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28


Found at i:123 original size:12 final size:12

Alignment explanation


    Indices: 106--131  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

         96 GTCGTCGTCG

                        
        106 TCGTCATCATCA
          1 TCGTCATCATCA

                        
        118 TCGTCATCATCA
          1 TCGTCATCATCA

              
        130 TC
          1 TC

        132 TTCTTCTTCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.23, C:0.35, G:0.08, T:0.35


Consensus pattern (12 bp):   
TCGTCATCATCA
Done.