Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23228

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 951

Length: 1586
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Found at i:187 original size:24 final size:24

Alignment explanation


    Indices: 154--234  Score: 72
    Period size: 24  Copynumber: 3.2  Consensus size: 24

        144 TCCTTTTCCA

                 *              *   
        154 GCACCCGAGCCTTCCAGTCCCTTT
          1 GCACCTGAGCCTTCCAGTCCATTT

                             **    *   
        178 GCACCTGAGCCTGCTTCTGGTCCTTTT
          1 GCACCTGAG-C--CTTCCAGTCCATTT

                 *                * 
        205 GCACCAGAGCCTTCCAGTCCATCT
          1 GCACCTGAGCCTTCCAGTCCATTT

                  
        229 GCACCT
          1 GCACCT

        235 CACCCCACTG


Statistics
Matches: 44,  Mismatches: 10, Indels: 6
        0.73            0.17        0.10

Matches are distributed among these distances:
  24   23  0.52
  25    1  0.02
  26    1  0.02
  27   19  0.43

ACGTcount: A:0.14, C:0.41, G:0.19, T:0.27


Consensus pattern (24 bp):   
GCACCTGAGCCTTCCAGTCCATTT
Done.