Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_30313

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 295

Length: 492
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.26


Found at i:273 original size:3 final size:3

Alignment explanation


    Indices: 265--292  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

        255 AAGAAGGGTA

                                                 
        265 CAT CAT CAT CAT CAT CAT CAT CAT CAT C
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT C

        293 GAAGTGGACC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32


Consensus pattern (3 bp):   
CAT

Done.