Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12729

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1799
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.21


Found at i:1725 original size:6 final size:6

Alignment explanation


    Indices: 1716--1743  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

       1706 CGGCAATGAC

                                            
       1716 GAAGAT GAAGAT GAAGAT GAAGAT GAAG
          1 GAAGAT GAAGAT GAAGAT GAAGAT GAAG

       1744 GGGGTGAGTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.50, C:0.00, G:0.36, T:0.14


Consensus pattern (6 bp):   
GAAGAT

Done.