Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09366

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 549

Length: 915
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26


Found at i:112 original size:3 final size:3

Alignment explanation


    Indices: 104--137  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

         94 ATATCTCAAC

                                     *   *               
        104 CTT CTT CTT CTT CTT CTT CAT CAT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C

        138 GTCGCCTTCT


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.06, C:0.35, G:0.00, T:0.59


Consensus pattern (3 bp):   
CTT

Done.