Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27261

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3138
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.27


Found at i:1368 original size:21 final size:21

Alignment explanation


    Indices: 1344--1385  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1334 CGAGGAAGAG

                                 
       1344 AAAGAGGAAAGTTCATTATGA
          1 AAAGAGGAAAGTTCATTATGA

                                 
       1365 AAAGAGGAAAGTTCATTATGA
          1 AAAGAGGAAAGTTCATTATGA

       1386 GCTGAGCAGT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.48, C:0.05, G:0.24, T:0.24


Consensus pattern (21 bp):   
AAAGAGGAAAGTTCATTATGA
Done.