Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19890

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27


Found at i:856 original size:66 final size:66

Alignment explanation


    Indices: 750--878  Score: 206
    Period size: 66  Copynumber: 2.0  Consensus size: 66

        740 TTGCACACGA

                    *                        *                               
        750 TGCATTTGGGGATTTTCAGAATGCTTCAAAACCGAGCACAACT-GCATTTCCTTCTAGCAGTTTC
          1 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAA-TGGCATTTCCTTCTAGCAGTTTC

              
        814 AG
         65 AG

                                                         *            *    
        816 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCGTTTCCTTCTAGCGGTTT
          1 TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCAGTTT

        879 TGGTTCAACT


Statistics
Matches: 58,  Mismatches: 4, Indels: 2
        0.91            0.06        0.03

Matches are distributed among these distances:
  65    1  0.02
  66   57  0.98

ACGTcount: A:0.26, C:0.22, G:0.20, T:0.33


Consensus pattern (66 bp):   
TGCATTTGAGGATTTTCAGAATGCTTCAAAACCAAGCACAATGGCATTTCCTTCTAGCAGTTTCA
G
Done.