Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14835

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33


Found at i:93 original size:3 final size:3

Alignment explanation


    Indices: 85--118  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

         75 TGGTGTTTTA

                                                *        
         85 GGT GGT GGT GGT GGT GGT GGT GGT GGT TGT GGT G
          1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT G

        119 TAATAGCCAC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35


Consensus pattern (3 bp):   
GGT

Done.