Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13199

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22


Found at i:134 original size:14 final size:14

Alignment explanation


    Indices: 115--147  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        105 TGGGCATCAG

                           
        115 GAAGA-GGATGAAAA
          1 GAAGAGGGA-GAAAA

                          
        129 GAAGAGGGAGAAAA
          1 GAAGAGGGAGAAAA

                 
        143 GAAGA
          1 GAAGA

        148 TGGCTGTTTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14   15  0.83
  15    3  0.17

ACGTcount: A:0.58, C:0.00, G:0.39, T:0.03


Consensus pattern (14 bp):   
GAAGAGGGAGAAAA
Done.