Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12791

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 307

Length: 513
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25


Found at i:274 original size:3 final size:3

Alignment explanation


    Indices: 268--302  Score: 61
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        258 AGAAGAAGAA

                                                  *       
        268 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAA GAT GA
          1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA

        303 CCTGGCCAAG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   30  1.00

ACGTcount: A:0.37, C:0.00, G:0.34, T:0.29


Consensus pattern (3 bp):   
GAT

Done.