Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15151

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1152
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21


Found at i:361 original size:51 final size:51

Alignment explanation


    Indices: 229--364  Score: 227
    Period size: 51  Copynumber: 2.7  Consensus size: 51

        219 AGCTACTAAG

                             *  *         *                    
        229 GATGAGGCACCAGTAGCTACCCCTGCAGCAACAGAAGCCCCTGCTAATGAT
          1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT

                             *                           *     
        280 GATGAGGCACCAGTAGCCACTCCTGCAGCACCAGAAGCCCCTGCTGATGAT
          1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT

                                              
        331 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAG
          1 GATGAGGCACCAGTAGCAACTCCTGCAGCACCAG

        365 TTGCAGGTGG


Statistics
Matches: 80,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  51   80  1.00

ACGTcount: A:0.28, C:0.32, G:0.25, T:0.15


Consensus pattern (51 bp):   
GATGAGGCACCAGTAGCAACTCCTGCAGCACCAGAAGCCCCTGCTAATGAT
Done.