Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05824

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1854
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Found at i:165 original size:6 final size:6

Alignment explanation


    Indices: 150--183  Score: 52
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        140 TAATGTCTTG

                                                    
        150 TTTTGTT TTTTGT TTTTGT TTTTGT TTTT-T TTTT
          1 TTTTG-T TTTTGT TTTTGT TTTTGT TTTTGT TTTT

        184 AAAGGTCTTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   5    5  0.19
   6   17  0.63
   7    5  0.19

ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88


Consensus pattern (6 bp):   
TTTTGT
Done.