Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20241

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4970
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27


Found at i:306 original size:18 final size:18

Alignment explanation


    Indices: 282--326  Score: 65
    Period size: 18  Copynumber: 2.5  Consensus size: 18

        272 GCGATTACAC

                               
        282 GGATGATGAAGG-AGATGA
          1 GGATGATGAAGGAAGA-GA

            *                 
        300 TGATGATGAAGGAAGAGA
          1 GGATGATGAAGGAAGAGA

                     
        318 GGATGATGA
          1 GGATGATGA

        327 TGAAAATGGG


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  18   21  0.88
  19    3  0.12

ACGTcount: A:0.40, C:0.00, G:0.42, T:0.18


Consensus pattern (18 bp):   
GGATGATGAAGGAAGAGA
Done.