Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06024

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 662

Length: 1104
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.25


Found at i:195 original size:3 final size:3

Alignment explanation


    Indices: 187--215  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

        177 CAATAATGCC

                                                  
        187 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA

        216 AGACCCCTCT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Done.