Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31442

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2969
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Found at i:85 original size:6 final size:6

Alignment explanation


    Indices: 76--101  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

         66 GCTCCTTCCT

                                          
         76 ATGGAC ATGGAC ATGGAC ATGGAC AT
          1 ATGGAC ATGGAC ATGGAC ATGGAC AT

        102 TCCGCTCCCT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.35, C:0.15, G:0.31, T:0.19


Consensus pattern (6 bp):   
ATGGAC

Done.