Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17741

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 860

Length: 1434
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27


Found at i:1108 original size:15 final size:16

Alignment explanation


    Indices: 1074--1110  Score: 51
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       1064 AACAACCAGT

                         *  
       1074 TCAA-ACAATGGGTCA
          1 TCAATACAATGGGACA

                            
       1089 TCAATACAATGGGACA
          1 TCAATACAATGGGACA

                   
       1105 -CAATAC
          1 TCAATAC

       1111 GCTCCGGGTA


Statistics
Matches: 20,  Mismatches: 1, Indels: 2
        0.87            0.04        0.09

Matches are distributed among these distances:
  15   10  0.50
  16   10  0.50

ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19


Consensus pattern (16 bp):   
TCAATACAATGGGACA
Done.