Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33127

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 298

Length: 498
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.25


Found at i:443 original size:6 final size:6

Alignment explanation


    Indices: 432--463  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

        422 GCGGGGAGAA

                                                 
        432 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GA
          1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GA

        464 AGTTCAAGGC


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00


Consensus pattern (6 bp):   
GAGAGG

Done.