Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24282

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2079
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:829 original size:6 final size:6

Alignment explanation


    Indices: 818--858  Score: 73
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        808 TTGACTCCTG

                                        *                  
        818 CACCTT CACCTT CACCTT CACCTT TACCTT CACCTT CACCT
          1 CACCTT CACCTT CACCTT CACCTT CACCTT CACCTT CACCT

        859 GAATTAGCAC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.17, C:0.49, G:0.00, T:0.34


Consensus pattern (6 bp):   
CACCTT

Done.