Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04158

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1326
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27


Found at i:1233 original size:21 final size:24

Alignment explanation


    Indices: 1202--1265  Score: 128
    Period size: 24  Copynumber: 2.7  Consensus size: 24

       1192 GGTGATCAAC

                                    
       1202 AACAGCAGCAGCTGCAATATGAGG
          1 AACAGCAGCAGCTGCAATATGAGG

                                    
       1226 AACAGCAGCAGCTGCAATATGAGG
          1 AACAGCAGCAGCTGCAATATGAGG

                            
       1250 AACAGCAGCAGCTGCA
          1 AACAGCAGCAGCTGCA

       1266 TCAGCAACAG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   40  1.00

ACGTcount: A:0.38, C:0.23, G:0.28, T:0.11


Consensus pattern (24 bp):   
AACAGCAGCAGCTGCAATATGAGG
Done.