Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04879

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 572

Length: 954
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28


Found at i:514 original size:3 final size:3

Alignment explanation


    Indices: 506--541  Score: 54
    Period size: 3  Copynumber: 12.0  Consensus size: 3

        496 AACAATGACC

                                *            *             
        506 CAT CAT CAT CAT CAT TAT CAT CAT CTT CAT CAT CAT
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT

        542 ATGGTTCTTC


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.31, G:0.00, T:0.39


Consensus pattern (3 bp):   
CAT

Done.