Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24797

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28


Found at i:942 original size:16 final size:16

Alignment explanation


    Indices: 909--941  Score: 57
    Period size: 17  Copynumber: 2.0  Consensus size: 16

        899 ACTTTAAAGA

                            
        909 GATCGAAGAACATGGG
          1 GATCGAAGAACATGGG

                             
        925 GATCGGAAGAACATGGG
          1 GATC-GAAGAACATGGG

        942 AATGAGTATC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16    4  0.25
  17   12  0.75

ACGTcount: A:0.36, C:0.12, G:0.39, T:0.12


Consensus pattern (16 bp):   
GATCGAAGAACATGGG
Done.