Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34587

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1347
ACGTcount: A:0.35, C:0.11, G:0.31, T:0.23


Found at i:931 original size:21 final size:21

Alignment explanation


    Indices: 888--932  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        878 AAAGAAGGTT

                             *   
        888 GGAAGAAAGAGAAAAGGGGAG
          1 GGAAGAAAGAGAAAAGGCGAG

                        *     *  
        909 GGAAGAAAGAGAGAAGGCTAG
          1 GGAAGAAAGAGAAAAGGCGAG

               
        930 GGA
          1 GGA

        933 GAAGCTGAGA


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.49, C:0.02, G:0.47, T:0.02


Consensus pattern (21 bp):   
GGAAGAAAGAGAAAAGGCGAG
Done.