Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28199

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2037
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.33


Found at i:448 original size:12 final size:12

Alignment explanation


    Indices: 433--489  Score: 51
    Period size: 12  Copynumber: 4.8  Consensus size: 12

        423 TCCCTCCTCT

                    *   
        433 CTTTCCTCTACC
          1 CTTTCCTCCACC

                  *  * *
        445 CTTTCCACCGCT
          1 CTTTCCTCCACC

                     *  
        457 CTTTCCTCCGCC
          1 CTTTCCTCCACC

                    *   
        469 CTTTCCTCTACC
          1 CTTTCCTCCACC

             *       
        481 CCTTCCTCC
          1 CTTTCCTCC

        490 CTCCGTTCAC


Statistics
Matches: 35,  Mismatches: 10, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   35  1.00

ACGTcount: A:0.05, C:0.54, G:0.04, T:0.37


Consensus pattern (12 bp):   
CTTTCCTCCACC
Done.