Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20648

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556

Length: 927
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26


Found at i:809 original size:14 final size:14

Alignment explanation


    Indices: 790--816  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        780 GATGCTTGTT

                          
        790 GGAGATGTTCCTTG
          1 GGAGATGTTCCTTG

                         
        804 GGAGATGTTCCTT
          1 GGAGATGTTCCTT

        817 ACTTCAGTGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.33, T:0.37


Consensus pattern (14 bp):   
GGAGATGTTCCTTG
Done.