Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01289

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2541
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31


Found at i:1297 original size:16 final size:15

Alignment explanation


    Indices: 1276--1305  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

       1266 CGTTTGGATT

                            
       1276 TTGGTGGGTCTCGTTG
          1 TTGGTGGGT-TCGTTG

                          
       1292 TTGGTGGGTTCGTT
          1 TTGGTGGGTTCGTT

       1306 ATCGTTTGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.00, C:0.10, G:0.43, T:0.47


Consensus pattern (15 bp):   
TTGGTGGGTTCGTTG
Done.