Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29626

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3562
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29


Found at i:60 original size:3 final size:3

Alignment explanation


    Indices: 46--86  Score: 73
    Period size: 3  Copynumber: 13.7  Consensus size: 3

         36 GCAACGCCAA

                     *                                            
         46 CAG CAG CGG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA

         87 AGCTGAGTCC


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   36  1.00

ACGTcount: A:0.32, C:0.34, G:0.34, T:0.00


Consensus pattern (3 bp):   
CAG

Done.