Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_12987

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26


Found at i:370 original size:3 final size:3

Alignment explanation


    Indices: 362--395  Score: 50
    Period size: 3  Copynumber: 11.3  Consensus size: 3

        352 GGTGATCAAA

                                     **                  
        362 ATG ATG ATG ATG ATG ATG ACA ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

        396 AGGACAAGGG


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.38, C:0.03, G:0.29, T:0.29


Consensus pattern (3 bp):   
ATG

Done.