Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07818

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 536

Length: 894
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24


Found at i:659 original size:12 final size:12

Alignment explanation


    Indices: 638--670  Score: 57
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        628 GTTGGGCTGA

                        
        638 GCAGCAGCAGCG
          1 GCAGCAGCAGCG

                 *      
        650 GCAGCGGCAGCG
          1 GCAGCAGCAGCG

                     
        662 GCAGCAGCA
          1 GCAGCAGCA

        671 ATGGGAATGC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.24, C:0.33, G:0.42, T:0.00


Consensus pattern (12 bp):   
GCAGCAGCAGCG
Done.